From 3169679f578b793e571b371e5b2caaf342248882 Mon Sep 17 00:00:00 2001
From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com>
Date: Mon, 3 Feb 2025 12:02:08 -0500
Subject: [PATCH] Updated QuickStart EukPhylo (markdown)

---
 QuickStart-EukPhylo.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md
index 5a74567..d2664b1 100644
--- a/QuickStart-EukPhylo.md
+++ b/QuickStart-EukPhylo.md
@@ -150,10 +150,10 @@ Below are several optional ways to parameterize EukPhylo Part 2
 |`--tree_method`|default = `iqtree`, choices = {`iqtree`, `raxml`, `all`|Change tree building software|
 
 **For BLAST and GUIDANCE:**
-|Parameter|Options|Help|
-|:---|:---|:---|
-|`--blast_cutoff`|default = 1e-20, type = float|Blast e-value cutoff|
-|`--len_cutoff`|default = 10, type = int|Amino acid length cutoff for removal of very short sequences after column removal in Guidance|
+|Parameter|Options|Description|Default|
+|:---|:---|:---|:---|
+|`--blast_cutoff`|float|Blast e-value cutoff|`1e-20`
+|`--len_cutoff`|default = , type = int|Amino acid length cutoff for removal of very short sequences after column removal in Guidance|10|
 |`--guidance_iters`|default = 5, type = int|Number of Guidance iterations for sequence removal|
 |`--seq_cutoff`|default = 0.3, type = float|During guidance, taxa are removed if their score is below this cutoff|
 |`--col_cutoff`|default = 0.0, type = float|During guidance, columns are removed if their score is below this cutoff|