From 89195241747ec7d099cad0a39f26e4de4a5aeb2a Mon Sep 17 00:00:00 2001 From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com> Date: Tue, 4 Feb 2025 10:08:01 -0500 Subject: [PATCH] Updated QuickStart EukPhylo (markdown) --- QuickStart-EukPhylo.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md index dd00bee..2aa13a3 100644 --- a/QuickStart-EukPhylo.md +++ b/QuickStart-EukPhylo.md @@ -84,9 +84,9 @@ To add the XPC option, only available for transcriptomes, user need to add the - * A folder called “Scripts” with the 10 scripts from [here](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1/Genomes/Scripts) on GitHub. To run locally, pull out all scripts into main folder ### Running: -``` +` python wrapper.py -1 1 -2 5 --cds CDS -o Output_Folder --genetic_code Gcodes.txt -d Databases > log.txt -``` +` Code parameters: | Parameter | Description|