diff --git a/QuickStart-EukPhylo.md b/QuickStart-EukPhylo.md
index dcd94be..6b34c59 100644
--- a/QuickStart-EukPhylo.md
+++ b/QuickStart-EukPhylo.md
@@ -135,9 +135,9 @@ For additional input parameter options, see table below or run: `python phylotol
 |`--start`|`raw`, `unaligned`, `aligned`, `trees`|Stage at which to start running PhyloToL|`raw`|
 |`--end`|`unaligned`, `aligned`, `trees`|Stage until which to run PhyloToL. Options are `unaligned` (which will run up to but not including guidance), `aligned` (which will run up to but not including RAxML), and `trees` which will run through RAxML')|`trees`|
 |`--gf_list`||Path to the file with the GFs of interest. Only required if starting from the raw dataset|None|
-|`--taxon_list`||Path to the file with the taxa (10-digit codes) to include in the output|None| 
-|`--data`||Path to the input dataset. The format of this varies depending on your `--start` parameter. If you are running the contamination loop starting with trees, this folder must include both trees **AND** a fasta file for each tree (with identical file names other than the extension) that includes an amino-acid sequence for each tip of the tree (with the sequence names matching exactly the tip names)|None|
-|`--output`||Directory where the output folder should be created. If not given, the folder will be created in the parent directory of the folder containing the scripts|`../`|
+|`--taxon_list`|Any valid path|Path to the file with the taxa (10-digit codes) to include in the output|None| 
+|`--data`|Any valid path|Path to the input dataset. The format of this varies depending on your `--start` parameter. If you are running the contamination loop starting with trees, this folder must include both trees **AND** a fasta file for each tree (with identical file names other than the extension) that includes an amino-acid sequence for each tip of the tree (with the sequence names matching exactly the tip names)|None|
+|`--output`|Any valid path|Directory where the output folder should be created. If not given, the folder will be created in the parent directory of the folder containing the scripts|`../`|
 
 
 ### Modularity of options