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Updated QuickStart EukPhylo (markdown)

Adri K. Grow 2025-02-03 11:48:59 -05:00
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QuickStart-EukPhylo.md

@ -205,7 +205,7 @@ Options:
| Parameter | Required | Options | Description | Default |
| ------------- | ------------- | ------------- | ------------- | ------------- |
| --contamination_loop | yes | seq, clade | The mode in which to run the CL | none |
| --nloops | no | any positive integer | Number of iterations | 5 |
| --nloops | no | any positive integer | Number of iterations | `5` |
| --sister_rules | only in sisters mode | Any valid path | Path to a text file containing sisters rules | none |
| --subsister_rules | only in subsisters mode | Any valid path | Path to a text file containing subsisters rules | none |
| --clade_grabbing_rules | only in clade mode | Any valid path | Path to a text file containing clade-grabbing rules | none |