diff --git a/Changelog.md b/Changelog.md
index c0853940e..ad1e120f2 100644
--- a/Changelog.md
+++ b/Changelog.md
@@ -7,6 +7,7 @@
 - 修复设置代理端口时检查端口占用
 - 修复 Monaco 编辑器初始化卡 Loading
 - 修复恢复备份时 `config.yaml` / `profiles.yaml` 文件内字段未正确恢复
+- 修复 Windows 下系统主题同步问题
 
 <details>
 <summary><strong> ✨ 新增功能 </strong></summary>
diff --git a/src-tauri/src/utils/resolve/mod.rs b/src-tauri/src/utils/resolve/mod.rs
index 7da555257..76dd05d07 100644
--- a/src-tauri/src/utils/resolve/mod.rs
+++ b/src-tauri/src/utils/resolve/mod.rs
@@ -22,6 +22,8 @@ use clash_verge_signal;
 
 pub mod dns;
 pub mod scheme;
+#[cfg(target_os = "windows")]
+pub mod theme;
 pub mod ui;
 pub mod window;
 pub mod window_script;
@@ -64,6 +66,8 @@ pub fn resolve_setup_async() {
         init_verge_config().await;
         Config::verify_config_initialization().await;
         init_window().await;
+        #[cfg(target_os = "windows")]
+        theme::start_windows_app_theme_watcher();
 
         let core_init = AsyncHandler::spawn(|| async {
             init_service_manager().await;
diff --git a/src-tauri/src/utils/resolve/theme.rs b/src-tauri/src/utils/resolve/theme.rs
new file mode 100644
index 000000000..6046bb3e0
--- /dev/null
+++ b/src-tauri/src/utils/resolve/theme.rs
@@ -0,0 +1,55 @@
+//! Windows app theme watcher.
+//!
+//! NOTE:
+//! Tauri's theme API is unreliable on Windows and may miss or delay
+//! system theme change events. As a workaround, we poll the system
+//! theme via the `dark-light` crate and emit a custom
+//! `verge://app-theme-changed` event to keep the frontend in sync.
+//!
+//! Windows-only, best-effort.
+
+use std::time::Duration;
+
+use dark_light::{Mode as SystemTheme, detect as detect_system_theme};
+use tauri::Emitter as _;
+
+use crate::{core::handle, process::AsyncHandler};
+
+const APP_THEME_EVENT: &str = "verge://app-theme-changed";
+
+fn resolve_apps_theme_mode() -> Option<&'static str> {
+    match detect_system_theme().ok()? {
+        SystemTheme::Dark => Some("dark"),
+        SystemTheme::Light => Some("light"),
+        SystemTheme::Unspecified => None,
+    }
+}
+
+pub fn start_windows_app_theme_watcher() {
+    AsyncHandler::spawn(|| async move {
+        let app_handle = handle::Handle::app_handle().clone();
+        let mut last_theme = resolve_apps_theme_mode();
+
+        if let Some(theme) = last_theme {
+            let _ = app_handle.emit(APP_THEME_EVENT, theme);
+        }
+
+        loop {
+            if handle::Handle::global().is_exiting() {
+                break;
+            }
+
+            tokio::time::sleep(Duration::from_millis(500)).await;
+            let Some(theme) = resolve_apps_theme_mode() else {
+                continue;
+            };
+
+            if last_theme.as_ref() == Some(&theme) {
+                continue;
+            }
+
+            last_theme = Some(theme);
+            let _ = app_handle.emit(APP_THEME_EVENT, theme);
+        }
+    });
+}
diff --git a/src/components/layout/use-custom-theme.ts b/src/components/layout/use-custom-theme.ts
index d65fbce00..1376606da 100644
--- a/src/components/layout/use-custom-theme.ts
+++ b/src/components/layout/use-custom-theme.ts
@@ -1,4 +1,6 @@
 import { alpha, createTheme, Theme as MuiTheme, Shadows } from "@mui/material";
+import { isTauri as isTauriApp } from "@tauri-apps/api/core";
+import { listen } from "@tauri-apps/api/event";
 import {
   getCurrentWebviewWindow,
   WebviewWindow,
@@ -9,6 +11,7 @@ import { useEffect, useMemo } from "react";
 import { useVerge } from "@/hooks/use-verge";
 import { defaultDarkTheme, defaultTheme } from "@/pages/_theme";
 import { useSetThemeMode, useThemeMode } from "@/services/states";
+import getSystem from "@/utils/get-system";
 
 const CSS_INJECTION_SCOPE_ROOT = "[data-css-injection-root]";
 const CSS_INJECTION_SCOPE_LIMIT =
@@ -26,6 +29,7 @@ const TOP_LEVEL_AT_RULES = [
   "@color-profile",
 ];
 let cssScopeSupport: boolean | null = null;
+const OS = getSystem();
 
 const canUseCssScope = () => {
   if (cssScopeSupport !== null) {
@@ -76,6 +80,8 @@ export const useCustomTheme = () => {
   const setMode = useSetThemeMode();
   const userBackgroundImage = theme_setting?.background_image || "";
   const hasUserBackground = !!userBackgroundImage;
+  const isTauri = typeof window !== "undefined" && isTauriApp();
+  const isWindows = OS === "windows";
 
   useEffect(() => {
     if (theme_mode === "light" || theme_mode === "dark") {
@@ -84,17 +90,7 @@ export const useCustomTheme = () => {
   }, [theme_mode, setMode]);
 
   useEffect(() => {
-    if (theme_mode !== "system") {
-      return;
-    }
-
-    const preferBrowserMatchMedia =
-      typeof window !== "undefined" &&
-      typeof window.matchMedia === "function" &&
-      // Skip Tauri flow when running purely in browser.
-      !("__TAURI__" in window);
-
-    if (preferBrowserMatchMedia) {
+    if (theme_mode !== "system" || !isTauri || isWindows) {
       return;
     }
 
@@ -133,7 +129,40 @@ export const useCustomTheme = () => {
           console.error("Failed to unlisten from theme changes:", err);
         });
     };
-  }, [theme_mode, appWindow, setMode]);
+  }, [theme_mode, appWindow, setMode, isTauri, isWindows]);
+
+  // Windows-only: Tauri's theme API is unreliable.
+  // Theme changes are detected in Rust and propagated via a custom event.
+  useEffect(() => {
+    if (theme_mode !== "system" || !isTauri || !isWindows) {
+      return;
+    }
+
+    let isMounted = true;
+    let unlisten: (() => void) | null = null;
+
+    listen<string>("verge://app-theme-changed", (event) => {
+      if (!isMounted) return;
+      if (event.payload === "dark" || event.payload === "light") {
+        setMode(event.payload);
+      }
+    })
+      .then((unlistenFn) => {
+        if (typeof unlistenFn === "function") {
+          unlisten = unlistenFn;
+        }
+      })
+      .catch((err) => {
+        console.error("Failed to listen to app theme changes:", err);
+      });
+
+    return () => {
+      isMounted = false;
+      if (typeof unlisten === "function") {
+        unlisten();
+      }
+    };
+  }, [theme_mode, setMode, isTauri, isWindows]);
 
   useEffect(() => {
     if (theme_mode !== "system") {
@@ -147,6 +176,10 @@ export const useCustomTheme = () => {
       return;
     }
 
+    if (isTauri && isWindows) {
+      return;
+    }
+
     const mediaQuery = window.matchMedia("(prefers-color-scheme: dark)");
     const syncMode = (isDark: boolean) => setMode(isDark ? "dark" : "light");
     const handleChange = (event: MediaQueryListEvent) =>
@@ -190,7 +223,7 @@ export const useCustomTheme = () => {
       ).removeListener;
       legacyRemoveListener?.call(legacyQuery, handleChange);
     };
-  }, [theme_mode, setMode]);
+  }, [theme_mode, setMode, isTauri, isWindows]);
 
   useEffect(() => {
     if (theme_mode === undefined) {
@@ -198,18 +231,16 @@ export const useCustomTheme = () => {
     }
 
     if (theme_mode === "system") {
-      appWindow.setTheme(null).catch((err) => {
-        console.error(
-          "Failed to set window theme to follow system (setTheme(null)):",
-          err,
-        );
+      const preferredTheme = isWindows ? (mode as TauriOsTheme) : null;
+      appWindow.setTheme(preferredTheme).catch((err) => {
+        console.error("Failed to set window theme for system mode:", err);
       });
     } else if (mode) {
       appWindow.setTheme(mode as TauriOsTheme).catch((err) => {
         console.error(`Failed to set window theme to ${mode}:`, err);
       });
     }
-  }, [mode, appWindow, theme_mode]);
+  }, [mode, appWindow, theme_mode, isWindows]);
 
   const theme = useMemo(() => {
     const setting = theme_setting || {};