YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 22:20:26 +08:00
Code Issues Packages Projects Releases Wiki Activity

Update wrapper_submit.sh

Browse Source
This commit is contained in:
Godwin Ani 2025-03-18 15:35:28 -04:00 committed by GitHub
parent ea87b7dcd6
commit 0383a3dd99
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 14 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
PTL1/Genomes/Scripts/wrapper_submit.sh
View File

@ -12,3 +12,17 @@
# Start at script 1 and go through script 5 (the final script) using the Universal genetic code # Start at script 1 and go through script 5 (the final script) using the Universal genetic code
python3 Scripts/wrapper.py -1 1 -2 5 --cds Input -o Output --genetic_code Universal --databases Databases > log.out python3 Scripts/wrapper.py -1 1 -2 5 --cds Input -o Output --genetic_code Universal --databases Databases > log.out
parent='/EukPhylo/PTL1/Genomes/Scripts/'
out_dir='/Output_data'
in_dir='/Input_data'
## EXAMPLE RUN COMMANDS BELOW
# A simple run of part 1
python3 ${parent}/wrapper.py \
--first_script 1 \
--last_script 5 \
--cds ${in_dir} \
--databases ${parent}Databases \
--genetic_code Universal \
--output ${out_dir} > Output.out