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Update wrapper_submit.sh

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Godwin Ani 2025-03-18 15:35:28 -04:00 committed by GitHub
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PTL1/Genomes/Scripts/wrapper_submit.sh
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@ -12,3 +12,17 @@
# Start at script 1 and go through script 5 (the final script) using the Universal genetic code
python3 Scripts/wrapper.py -1 1 -2 5 --cds Input -o Output --genetic_code Universal --databases Databases > log.out
parent='/EukPhylo/PTL1/Genomes/Scripts/'
out_dir='/Output_data'
in_dir='/Input_data'
## EXAMPLE RUN COMMANDS BELOW
# A simple run of part 1
python3 ${parent}/wrapper.py \
--first_script 1 \
--last_script 5 \
--cds ${in_dir} \
--databases ${parent}Databases \
--genetic_code Universal \
--output ${out_dir} > Output.out