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Update guidance.py
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@ -61,6 +61,9 @@ def run(params):
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if nseqs > 2000:
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too_many_seqs = True
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print(file + 'has more than 2000 seqs')
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print('Do you want to run this?')
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print('Stopping run.')
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break
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if too_many_seqs and not params.allow_large_files:
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