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Godwin Ani 2024-01-12 10:59:47 -05:00 committed by GitHub
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Utilities/for_fastas/SeqLengthToCsv_Feb9.py
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'''
Professor L. Katz and Godwin Ani
9th-Feb-2023
Seq_length_to_csv is a program that exports the length of DNA sequences excluding gaps and missing data to a csv file.
#Author, date: Godwin Ani, 9th- Feb - 2023.
#Dependencies: Python3, Biopython
#Intent: Exports the length of DNA sequences excluding gaps and missing data to a csv file.
#Inputs: A folder named 'Seq_length' containing DNA fasta files.
#Outputs: A spreadsheet containing the length of the sequences.
#Example: python Seq_length_to_csv.py
'''
import os, sys, re
from Bio import SeqIO
from Bio.Seq import Seq