YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 03:40:24 +08:00
Code Issues Packages Projects Releases Wiki Activity

Update Assess_transcriptomes_v2.0.py

Browse Source
This commit is contained in:
Godwin Ani 2024-01-15 14:54:55 -05:00 committed by GitHub
parent e756e8733b
commit 0aced94675
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
Utilities/For_Assemblies/Assess_transcriptomes_v2.0.py
View File

@ -6,7 +6,7 @@
#Inputs: Folder called Renamed_assembled_files of previously renamed files (if this is the case, put -r or --renamed in the command line)
tsv file of LKH number and new names formatted like this: 10_digit_code\tdescriptor_of_taxon called new_names.tsv
#Outputs: A spreadsheet containing the length, GC, and coverage of each transcript.
#Example: python assess_transcriptomes.py -input <pathway to directory of spades output>
#Example: python Assess_transcriptomes_v2.0.py -input <pathway to directory of spades output>
'''
import os
import sys