From 0b1feed651bd3da7e6530d8ec84bb5f409ee6777 Mon Sep 17 00:00:00 2001 From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com> Date: Fri, 27 Jun 2025 12:39:05 -0400 Subject: [PATCH] Update ProcessAndRenameAssembledData.py --- Utilities/For_Assemblies/ProcessAndRenameAssembledData.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Utilities/For_Assemblies/ProcessAndRenameAssembledData.py b/Utilities/For_Assemblies/ProcessAndRenameAssembledData.py index 97395eb..7fcf5b2 100644 --- a/Utilities/For_Assemblies/ProcessAndRenameAssembledData.py +++ b/Utilities/For_Assemblies/ProcessAndRenameAssembledData.py @@ -1,7 +1,7 @@ ''' Author & Date: Adri K. Grow + ChatGPT, Nov 11th 2024 - Updated 02/13/25 to accept either transcriptome and genome assembled data in command line -Motivation: assess and rename assembled transcript or genome files for PTL6p1 (or EPv1p1) +Motivation: assess and rename assembled transcript or genome files for use in EukPhylo Part 1 Intention: warn if any 'transcripts.fasta' or 'contigs.fasta' files are missing or empty for an LKH, otherwise rename and copy them with their assigned 10-digit code by LKH Input: - a base directory containing subdirectories for each LKH assembled file, named 'WTA_LKH' or 'WGA_LKH', each containing a 'transcripts.fasta' or 'contigs.fasta' file