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Update run_eukphylo.sh

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Adri K. Grow 2025-08-25 17:18:13 -04:00 committed by GitHub
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PTL2/run_eukphylo.sh
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@ -46,10 +46,10 @@ module load IQ-TREE/2.1.2-gompi-2021b
module load tqdm/4.64.1-GCCcore-12.2.0 module load tqdm/4.64.1-GCCcore-12.2.0
module load Python/3.9.6-GCCcore-11.2.0 module load Python/3.9.6-GCCcore-11.2.0
module load Guidance_mid #Smith College HPC specific module load Guidance_mid #Smith College HPC specific
export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific #export PATH=$PATH:/Path/To/Executable/Files
#export PATH=$PATH:/Path/To/Executable/Files
export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific
## Provide your parent path
parent='/Your/Home/Folder/' # The folder where you are running EukPhylo (this should contain the Scripts and input data folders) parent='/Your/Home/Folder/' # The folder where you are running EukPhylo (this should contain the Scripts and input data folders)
## EXAMPLE RUN COMMANDS BELOW ## EXAMPLE RUN COMMANDS BELOW