YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 05:10:28 +08:00
Code Issues Packages Projects Releases Wiki Activity

Adding keep_iter parameter

Browse Source
This commit is contained in:
Godwin Ani 2024-03-22 15:07:25 -04:00 committed by GitHub
parent 80ad29e6d5
commit 13e6d300c5
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 2 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
PTL2/Scripts/utils.py
View File

@ -68,6 +68,8 @@ def get_params():
other.add_argument('--concat_target_taxa', nargs = '+', default = None, help = 'The taxonomic group (sequence prefix), groups, or a file containing a list of groups (multiple prefixes) for which to select sequences to construct a concatenated alignment')
other.add_argument('--tree_font_size', default = 12, help = "Change this if you're not quite happy with the font size in the output trees. If you want smaller font in your trees, you can lower this value; and if you want larger font in your trees, you can raise this value. Some common values are 8, 10, and 12. Size 16 font is pretty big, and size 4 font is probably too small for most purposes. Iconoclasts use size 9, 11, or 13 font.")
other.add_argument('--keep_temp', action = 'store_true', help = "Use this to keep ALL Guidance intermediate files")
other.add_argument('--keep_iter', '-z', action = 'store_true', help = 'Keep all Guidance iterations (beware this will be very large)')
return parser.parse_args()