diff --git a/PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py b/PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py index 7f137d7..86f3464 100644 --- a/PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py +++ b/PTL1/Transcriptomes/Scripts/1a_TranscriptLengthFilter.py @@ -1,25 +1,14 @@ -#!/usr/bin/env python3.6 +# Last updated 01/04/2023 -##__Updated__: 01_04_2023 by Auden Cote-L'Heureux -##__Usage__: python 1_ContigFiltStats.py -##__Options__: python 1_ContigFiltStats.py --help +# This script is intended to remove transcripts below or above a given +# size range from a transcriptome assembly. -######################################################################################## -## This script is intended to remove transcripts below or above a given -## size range from a transcriptome assembly. -## -## Prior to running this script, ensure the following: -## 1. You have assembled your transcriptome and COPIED the 'assembly' file -## (contigs.fasta, or scaffolds.fasta) to the PostAssembly Folder -## -## COMMAND Example Below -## -## E-mail Xyrus (author) for help if needed: maurerax@gmail.com -## -## Next Script(s) to Run: -## AutoBactVsEuk.py (removes SSU then Bact) or 2a_removeSSU.py then 2b_removeBact.py -## -######################################################################################## +# Prior to running this script, ensure that you have assembled your +# transcriptome and renamed the assembled transcripts in the format of +# rnaSpades. Each file name should be of the format +# Op_me_Hsap_assembledTranscripts.fasta, replacing "Op_me_Hsap" with the +# 10-digit taxon identifier of your choice. See example data on the GitHub +# for reference. import argparse, os, sys