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Update ReadMapping.py

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Adri K. Grow 2024-12-06 12:20:50 -05:00 committed by GitHub
parent 61f808343f
commit 1c309f8e10
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1 changed files with 2 additions and 2 deletions
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Utilities/for_taxonomy/ReadMapping.py
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@ -1,6 +1,6 @@
''' '''
#Author, date: ? #Author, date: ?
#Uploaded: updated by Adri Grow, 2024 (previous Adri Grow 2023) #Uploaded: updated by Adri Grow, 2024
#Intent: map a group of trimmed reads to a reference. #Intent: map a group of trimmed reads to a reference.
#Dependencies: Python3, hisat2, samtools, sambamba #Dependencies: Python3, hisat2, samtools, sambamba
#EDIT LINES: 18 & 32 #EDIT LINES: 18 & 32
@ -45,7 +45,7 @@ for x in folder:
if(file.endswith('.sam') or file.endswith('.bam')): if(file.endswith('.sam') or file.endswith('.bam')):
os.rename(file,x[:7] + '/' + file) os.rename(file,x[:7] + '/' + file)
print("~~~~~~~~~~~:>~") #When the snake appears, your script has run! print("~~~~~~~~~~~:>~") #When the snake appears in terminal, your script has finished running!