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Update assess_transcriptomes.py

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ElinorSterner 2023-04-24 13:36:12 -04:00 committed by GitHub
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Utilities/For_Assemblies/assess_transcriptomes.py
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@ -5,7 +5,7 @@ This script will rename the spades output to new names in the txt file, then ite
Input: Input:
Directory of directories output by rnaSpades OR folder called Renamed_assembled_files of previously renamed files (if this is the case, put -r or --renamed in the command line) Directory of directories output by rnaSpades OR folder called Renamed_assembled_files of previously renamed files (if this is the case, put -r or --renamed in the command line)
txt file of LKH number and new names formatted like this: LKHxxx\tLKHxxx-10_digit_code-descriptor_of_taxon txt file of LKH number and new names formatted like this: LKHxxx\tLKHxxx-10_digit_code\tdescriptor_of_taxon
To run if your files are already renamed: To run if your files are already renamed:
python assess_transcriptomes.py <pathway to directory of spades output> python assess_transcriptomes.py <pathway to directory of spades output>