YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 01:10:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Update README.md

Browse Source
This commit is contained in:
Katzlab 2024-08-14 11:58:41 -04:00 committed by GitHub
parent 9ecc2d899a
commit 2a305403a5
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 2 additions and 19 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

21
README.md
View File

@ -1,21 +1,4 @@
![Lab image](Other/Katzlab.png)
# 💻🧬 PhyloToL-6
> **PhyloToL-6** is an updated version of the PhyloToL program and it was started in 2023.
***
[PTL1](/PTL1) includes scripts for assigning transcripts and cds' to gene familes (OGs).
***
[PTL2](/PTL2) is a repository for main MSA and tree building scripts.
***
[HookDB](/HookDB) is our set of eukaryotic gene families, a subsample of gene families from orthomcl 6.
***
[Utilities](/Utilities) includes many useful tools for analyzing sequence data.
***
<img src="https://github.com/Katzlab/PhyloToL-6/blob/main/Other/Katzlab.png">
### Katz lab
>[About Katz Lab](https://www.science.smith.edu/katz-lab/) &nbsp; \| &nbsp;
📧:lkatz@smith.edu &nbsp; \| &nbsp; 📞: (413) 585-3825 &nbsp; \|
:office: Address: Burton Hall 201, 46 College Lane,
Smith College, Northampton Massachusetts.
**PhyloToL version 6** is the latest version of the PhyloToL pipeline from the [Katz Lab](https://www.science.smith.edu/katz-lab/) at Smith College. PhyloToL is a phylogenomic toolkit for processing transcriptomic and genomic data that includes novel phylogeny-informed contamination removal techniques. See our [Wiki](https://github.com/Katzlab/PhyloToL-6/wiki) for more information on installation and usage!