From 2ac482572d3375cbbbb44f62403ee1cbbc5c0777 Mon Sep 17 00:00:00 2001 From: Auden Cote-L'Heureux <52716489+AudenCote@users.noreply.github.com> Date: Thu, 2 May 2024 14:18:32 -0400 Subject: [PATCH] Fixing dot vs dash in trees.py --- PTL2/Scripts/trees.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/PTL2/Scripts/trees.py b/PTL2/Scripts/trees.py index 1b4df49..953ad81 100644 --- a/PTL2/Scripts/trees.py +++ b/PTL2/Scripts/trees.py @@ -47,7 +47,7 @@ def run(params): #Copy over the final output if os.path.isfile(tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile'): - os.system('cp ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile ' + params.output + '/Output/Trees/' + file.split('.')[0].split('_preguidance')[0] + '_IQTree.tree') + os.system('cp ' + tax_iqtree_outdir + '/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.treefile ' + params.output + '/Output/Trees/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.tree') #color(params.output + '/Output/Trees/' + file.split('.')[0].split('_preguidance')[0] + '.IQTree.tree') else: print('\nWARNING: No tree file created by IQ-Tree for OG ' + file[:10] + '\n')