diff --git a/Utilities/for_taxonomy/get_taxonomy.py b/Utilities/for_taxonomy/get_taxonomy.py index 4e53028..4fe7475 100644 --- a/Utilities/for_taxonomy/get_taxonomy.py +++ b/Utilities/for_taxonomy/get_taxonomy.py @@ -1,3 +1,12 @@ +''' +#Author, date: Uploaded by Adri Grow, 2023 +#Intent: To get the NCBI taxonomic classification of organisms. +#Dependencies: Python3, esearch +#Inputs: Spreadsheet with ten digit codes in the first column and the genus and species names in the second column. +#Outputs: Spreadsheet with taxonomy. +#Example: python get_taxonomy.py --input_file +''' + import os import sys from subprocess import check_output @@ -176,4 +185,4 @@ def main(): #add_to_seq_count_spreadsheet() -main() \ No newline at end of file +main()