diff --git a/PTL1/Genomes/Scripts/CUB.py b/PTL1/Genomes/Scripts/CUB.py index 9b745f0..a0198bd 100644 --- a/PTL1/Genomes/Scripts/CUB.py +++ b/PTL1/Genomes/Scripts/CUB.py @@ -1,12 +1,15 @@ # Last updated Sept 2023 -# Author: Xyrus Maurer-Alcalá +# Author: Xyrus Maurer-Alcalá and Auden Cote-L'Heureux # The aim of this script is to generate lots of codon usage statistics to aid in # identifying useful characteristics for de novo ORF calling. It is intended to be -# stored in the 'Scripts' folder for the PhyloToL Part 1 pipeline scripts, and is +# stored in the 'Scripts' folder for the EukPhylO Part 1 pipeline scripts, and is # called by Script 5b to calculate composition statistics for Part 1 output files. # It should not be run separately. +# Users should think about including start/stop constraint as default includes all +# sequences, which can capture pseudogenes + # Dependencies: # Python3, numpy, BioPython