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Update Cluster.py

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Godwin N. Ani 2025-03-21 13:42:57 -04:00 committed by GitHub
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commit 3d8cd2e221
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Utilities/for_fastas/Cluster.py
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@ -58,7 +58,7 @@ def main():
elif args.type == 'dna': elif args.type == 'dna':
identity = input_validation(args.identity, 'ERROR! Use format 0.## for DNA sequence identity threshold.') identity = input_validation(args.identity, 'ERROR! Use format 0.## for DNA sequence identity threshold.')
overlap = input_validation(args.overlap, 'ERROR! Use format 0.## for DNA sequence alignment overlap value.') overlap = input_validation(args.overlap, 'ERROR! Use format 0.## for DNA sequence alignment overlap value.')
cluster_sequences('cd-hit-est', identity, overlap, args.input, args.output) cluster_sequences('cd-hit-est', identity, overlap, args.input_files, args.output)
else: else:
print('Invalid sequence type. Choose "aa" for Amino Acids or "dna" for DNA.') print('Invalid sequence type. Choose "aa" for Amino Acids or "dna" for DNA.')
exit(1) exit(1)