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Update Gappiness.py

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Godwin Ani 2024-06-03 16:09:29 -04:00 committed by GitHub
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Utilities/for_MSAs/Gappiness.py
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#Intent: To use the gappyness stats in filtering paralogs.
#Inputs: A folder of alignment files
#Outputs: A spreadsheet of the gappyness stats
#Example: python Gappiness_v2.0.py --alignment /Path/to/alignments --code ten digit code
#Example: python Gappiness.py --alignment /Path/to/alignments --code ten digit code
#Dependencies
import os, sys, re