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Update contamination.py
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@ -480,10 +480,5 @@ def run(params):
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os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
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os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
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#if 'iqtree' in params.cl_tree_method:
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#os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')
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#elif params.cl_tree_method == 'raxml':
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#os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
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#trees.run(params)
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