diff --git a/Utilities/for_trees/CladeGrabbing_v3.2.py b/Utilities/for_trees/CladeGrabbing_v3.2.py index 90c8589..f2a65e2 100644 --- a/Utilities/for_trees/CladeGrabbing_v3.2.py +++ b/Utilities/for_trees/CladeGrabbing_v3.2.py @@ -2,7 +2,7 @@ #Motivation: Select robust sequences from trees #Intent: Select clades of interest from large trees using taxonomic specifications #Dependencies: Python3, ete3, Biopython -#Inputs: A folder of trees and corresponding unaligned .fasta files +#Inputs: A folder containing: all PTLp2 output trees and all corresponding unaligned .fasta (pre-guidance) files #Outputs: A folder of grabbed clades and filtered unaligned fasta files #Example: python CladeGrabbing_v3.2.py --input /Path/to/trees --target Sr_rh --min_presence 20 #IMPORTANT: key parameters explained in "add_argument" section below