From 5486c4289b7013309c3995a26a4743a3d31ba790 Mon Sep 17 00:00:00 2001 From: "Godwin N. Ani" Date: Tue, 1 Jul 2025 11:11:21 -0400 Subject: [PATCH] Add files via upload --- Utilities/For_Assemblies/WTA_rspades.sh | 18 ++++++++++++++++++ 1 file changed, 18 insertions(+) create mode 100644 Utilities/For_Assemblies/WTA_rspades.sh diff --git a/Utilities/For_Assemblies/WTA_rspades.sh b/Utilities/For_Assemblies/WTA_rspades.sh new file mode 100644 index 0000000..f91f6af --- /dev/null +++ b/Utilities/For_Assemblies/WTA_rspades.sh @@ -0,0 +1,18 @@ +#!/bin/bash +# +#SBATCH --job-name=Gigi_spades +#SBATCH --output=rnaSPAdes_run.%j.out # Stdout (%j expands to jobId) +#SBATCH --nodes=1 +#SBATCH --ntasks=1 +#SBATCH --ntasks-per-node=64 +#SBATCH --mem=180G +#SBATCH --mail-type=ALL +#SBATCH --mail-user=xxx@xxx.edu + +module purge #Cleans up any loaded modules +module load SPAdes + +rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595464_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595464_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595464 +rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595465_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595465_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595465 +rnaspades.py -m 500 -t 50 -1 ToAssemble/SRR26595468_FPE_q24_minlen75.fastq.gz -2 ToAssemble/SRR26595468_RPE_q24_minlen75.fastq.gz -o Assembled/SRR26595468 +