From 58522154b59d7cd44f47db3a65606cba981d2bc4 Mon Sep 17 00:00:00 2001
From: Godwin Ani <aniigodwinn@gmail.com>
Date: Tue, 18 Mar 2025 15:48:51 -0400
Subject: [PATCH] Entrypoint file

---
 Other/entrypoint.sh | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 Other/entrypoint.sh

diff --git a/Other/entrypoint.sh b/Other/entrypoint.sh
new file mode 100644
index 0000000..c2b828d
--- /dev/null
+++ b/Other/entrypoint.sh
@@ -0,0 +1,23 @@
+#!/bin/bash
+
+# Default mode
+MODE="transcriptomes"
+
+# Parse command-line arguments
+while [[ "$#" -gt 0 ]]; do
+    case $1 in
+        --mode) MODE="$2"; shift ;;  # Read the next argument as the mode
+        *) echo "Unknown parameter: $1"; exit 1 ;;
+    esac
+    shift
+done
+
+# Run the appropriate script based on the mode
+if [[ "$MODE" == "transcriptomes" ]]; then
+    exec /EukPhylo/PTL1/Transcriptomes/Scripts/wrapper_submit.sh
+elif [[ "$MODE" == "genomes" ]]; then
+    exec /EukPhylo/PTL1/Genomes/Scripts/wrapper_submit.sh
+else
+    echo "Invalid mode: $MODE. Use --mode transcriptomes or --mode genomes."
+    exit 1
+fi