diff --git a/Utilities/for_trees/CladeGrabbing.py b/Utilities/for_trees/CladeGrabbing.py index fe6476a..9bc7027 100644 --- a/Utilities/for_trees/CladeGrabbing.py +++ b/Utilities/for_trees/CladeGrabbing.py @@ -4,7 +4,7 @@ #Dependencies: Python3, ete3, Biopython #Inputs: A folder containing: all PTLp2 output trees and all corresponding unaligned .fasta (pre-guidance) files #Outputs: A folder of grabbed clades and filtered unaligned fasta files -#Example: python CladeGrabbing.py --input /Path/to/trees --target Sr_rh --min_presence 20 +#Example: python CladeGrabbing.py --input /Path/To/TreesandPreGuidance --target Sr_rh --min_presence 20 #IMPORTANT: key parameters explained in "add_argument" section below #Dependencies