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Small update to concatenate.py

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Auden Cote-L'Heureux 2024-01-24 11:58:57 -05:00 committed by GitHub
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commit 59bf186e91
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PTL2/Scripts/concatenate.py
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@ -179,7 +179,7 @@ def remove_paralogs(params):
best_size = max(list(clades.values())) best_size = max(list(clades.values()))
#Get a list of sequences in a clade of that size #Get a list of sequences in a clade of that size
best_seqs = [seq for seq in taxseqs]# if clades[seq] == best_size] best_seqs = [seq for seq in taxseqs if clades[seq] == best_size]
#If there is only one sequence in the best-sized clade, take it and finish #If there is only one sequence in the best-sized clade, take it and finish
if len(best_seqs) == 1: if len(best_seqs) == 1: