From 5c6573e0f9f2932b006ec213f3a27f9e88158c40 Mon Sep 17 00:00:00 2001 From: Katzlab Date: Sat, 20 Jan 2024 16:18:22 -0500 Subject: [PATCH] Updating header --- PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py b/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py index 51136f7..54dbcad 100644 --- a/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py +++ b/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py @@ -7,6 +7,10 @@ # plate. This script is optional, but to be run as part of the # PhyloToL version 6 Part 1 pipeline using the script wrapper.py +# The specifics of parameters are described below and include removing seqs 1/10 +# the coverage of the most highly expressed, and keeping all seqs with coverage >50. +# All of these parameters can be changed by users. + # Before running this script, you must run Script 1a. The default # clustering parameters are below, decided upon after manual inspection # of results from sample data under multiple parametrizations, but are