diff --git a/PTL1/Genomes/Scripts/4_CountOGsDiamond.py b/PTL1/Genomes/Scripts/4_CountOGsDiamond.py index a2892b3..bd136c2 100644 --- a/PTL1/Genomes/Scripts/4_CountOGsDiamond.py +++ b/PTL1/Genomes/Scripts/4_CountOGsDiamond.py @@ -1,18 +1,13 @@ -#!/usr/bin/env python3.5 +# Last updated Sept 19th 2023 +# Author: Xyrus Maurer-Alcala -##__Updated__: 18_09_2023 (by ACL) -##__Author__: Xyrus Maurer-Alcala; maurerax@gmail.com -##__Usage__: python 3g_GCodeTranslate.py --help - -############################################################################## -## ## -## This scrip will categorize TRANSLATED CDSs into Homologous Gene Families ## -## ## -## Questions about Gene Family Binning/Source? SEE NOTES at Bottom! ## -## ## -## E-mail Xyrus (author) for help if needed: maurerax@gmail.com ## -## ## -############################################################################## +# This script classifies translated CDS into gene families by +# similarity-searching using Diamond against a reference database of +# gene families. We provide the Hook database on the GitHub, but this +# may be replaced with a custom reference database by REPLACING the +# .dmnd and .fasta files in the Databases/db_OG folder. This script +# is intended to be run as part of the PhyloToL 6 Part 1 pipeline using +# the script wrapper.py. import argparse, os, re, sys from argparse import RawTextHelpFormatter, SUPPRESS