diff --git a/Utilities/for_fastas/Cluster.py b/Utilities/for_fastas/Cluster.py
deleted file mode 100644
index a885c94..0000000
--- a/Utilities/for_fastas/Cluster.py
+++ /dev/null
@@ -1,67 +0,0 @@
-'''
-#Author, date: Godwin Ani and Laura Katz, 9th- Feb - 2023.
-#Dependencies: Python3, CD-Hit
-#Intent: For clustering nucleotide or amino acid sequences with the CD-Hit program.
-#Inputs: A folder of containing  Amino acid or DNA fasta files.
-#Outputs: A folder of clustered files.
-#Example: python Cluster.py --type dna --identity 0.95 --overlap 0.67 --input input_folder_dna --output output_folder_dna
-'''
-
-
-
-import os
-import argparse
-from tqdm import tqdm
-import subprocess
-
-def input_validation(value, error_message):
-    try:
-        integer, fractional = value.split('.')
-        value = float(value)
-        if int(integer) == 0 and len(fractional) == 2:
-            return value
-    except ValueError:
-        pass
-    print(error_message)
-    exit(1)
-
-def cluster_sequences(program, identity, overlap, input_folder, output_folder):
-    for file in tqdm(os.listdir(input_folder)):
-        if file.endswith('.fasta'):
-            subprocess.run([f'{program}', '-i', f'{input_folder}/{file}', '-o', f'{output_folder}/{file}', '-c', f'{identity}', '-d', '0', '-aS', f'{overlap}'])
-
-    for file in os.listdir(output_folder):
-        if file.endswith('.clstr'):
-            os.rename(f'{output_folder}/{file}', f'{output_folder}/{file.split("FILE")[0]}Clustered.txt')
-
-def main():
-    parser = argparse.ArgumentParser(description='Cluster amino acid or DNA sequences using CD-HIT.')
-    parser.add_argument('--type', choices=['aa', 'dna'], required=True, help='Type of sequences (aa for Amino Acids, dna for DNA)')
-    parser.add_argument('--identity', type=str, required=True, help='Sequence Identity Threshold (e.g., 0.99, 0.95)')
-    parser.add_argument('--overlap', type=str, required=True, help='Sequence Alignment Overlap Value (e.g., 0.67, 0.75)')
-    parser.add_argument('--input_files', type=str, required=True, help='Input folder containing sequences in fasta format')
-    parser.add_argument('--output', type=str, required=True, help='Output folder for clustered sequences')
-
-    args = parser.parse_args()
-
-    if not os.path.isdir(args.input_files):
-        print(f'Error: Input folder "{args.input_files}" does not exist.')
-        exit(1)
-
-    if not os.path.isdir(args.output):
-        os.mkdir(args.output)
-
-    if args.type == 'aa':
-        identity = input_validation(args.identity, 'ERROR! Use format 0.## for Amino acids sequence identity threshold.')
-        overlap = input_validation(args.overlap, 'ERROR! Use format 0.## for Amino acids sequence alignment overlap value.')
-        cluster_sequences('cd-hit', identity, overlap, args.input_files, args.output)
-    elif args.type == 'dna':
-        identity = input_validation(args.identity, 'ERROR! Use format 0.## for DNA sequence identity threshold.')
-        overlap = input_validation(args.overlap, 'ERROR! Use format 0.## for DNA sequence alignment overlap value.')
-        cluster_sequences('cd-hit-est', identity, overlap, args.input_files, args.output)
-    else:
-        print('Invalid sequence type. Choose "aa" for Amino Acids or "dna" for NTD.')
-        exit(1)
-
-if __name__ == "__main__":
-    main()