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Update wrapper_submit.sh

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Adri K. Grow 2025-06-11 23:46:58 -04:00 committed by GitHub
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PTL1/Transcriptomes/Scripts/wrapper_submit.sh
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@ -29,7 +29,7 @@ parent='/Your/Home/Folder/'
## Example commands
# A simple run that goes from script 1 to script 7 (the last script) using the Universal genetic code
srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts ${parent}AssembledTranscripts --genetic_code ${parent}Gcode.txt --databases ${parent}Databases > log.out
srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts ${parent}AssembledTranscripts -o ${parent}Out --genetic_code ${parent}Gcode.txt --databases ${parent}Databases > log.out
# Including the cross-plate contamination step, using conspecific names
srun -D ${parent} python3 ${parent}Scripts/wrapper.py --first_script 1 --last_script 7 --assembled_transcripts ${parent}AssembledTranscripts --output . --genetic_code ${parent}Gcode.txt --databases ${parent}Databases --xplate_contam --conspecific_names ${parent}Conspecific.txt > log.out