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Update wrapper_submit.sh

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PTL1/Genomes/Scripts/wrapper_submit.sh
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#!/bin/bash
## Last updated Jan 2025 by Auden Cote-L'Heureux
## This script is intended to be used to process genomic CDS with EukPhylo part 1 on an HPC that uses the Slurm workload manager.
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## needs and restrictions, followed by some example commands taken from the GitHub Wiki, more detail for which can be found
## here: https://github.com/Katzlab/EukPhylo/wiki/EukPhylo-Part-1:-GF-assignment
#!/bin/bash
## Slurm specific code
#SBATCH --job-name=EukPhylo
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module purge #Cleans up any loaded modules
module load slurm
module load tqdm
module load Biopython/1.75-foss-2019b-Python-3.7.4
module load BLAST+/2.9.0-gompi-2019b
module load DIAMOND/0.9.30-GCC-8.3.0
module load tqdm/4.62.3-GCCcore-11.2.0
module load Biopython/1.79-foss-2021b
module load BLAST+/2.12.0-gompi-2021b
module load DIAMOND/2.0.13-GCC-11.2.0
module load VSEARCH/2.22.1-GCC-11.3.0
path='/Your/Home/Folder'
parent='/Your/Home/Folder'
## Example run command
# Start at script 1 and go through script 5 (the final script) using the Universal genetic code
srun -D ${path}Scripts python3 ${path}Scripts/wrapper.py -1 1 -2 5 --cds ${path}Input -o ${path}Output --genetic_code Universal --databases ${path}Databases
srun -D ${parent}Scripts python3 ${parent}Scripts/wrapper.py -1 1 -2 5 --cds ${parent}Input -o ${parent}Output --genetic_code Universal --databases ${parent}Databases > log.out