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Cluster_v2.0.py

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Godwin Ani 2024-01-18 09:31:35 -05:00 committed by GitHub
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Utilities/for_fastas/Cluster_v2.0.py
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'''
#Author, date: Godwin Ani and Laura Katz, 9th- Feb - 2023.
#Dependencies: Python3, CD-Hit
#Intent: For clustering nucleotide or amino acid sequences with the CD-Hit program.
#Inputs: A folder of containing Amino acid or DNA fasta files.
#Outputs: A folder of clustered files.
#Example: python Cluster_v2.0.py --type dna --identity 0.95 --overlap 0.67 --input input_folder_dna --output output_folder_dna