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Godwin Ani 2024-01-12 10:07:42 -05:00 committed by GitHub
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Utilities/for_fastas/OG6_A_G.py
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'''
#Author, date: Godwin Ani, 24th- Nov - 2023. #Author, date: Godwin Ani, 24th- Nov - 2023.
#Dependencies: Python3, Biopython #Dependencies: Python3, Biopython
#Inputs: A folder of containing ReadyToGo files, PerSequenceStatSummaries, rules file and the script. #Inputs: A folder of containing ReadyToGo files, PerSequenceStatSummaries, rules file and the script.
#The csv file should contain 10 digit codes and the limits(column headers are name, lower, and upper). #The csv file should contain 10 digit codes and the limits(column headers are name, lower, and upper).
#Outputs: a folder of curated ready to go files. #Outputs: a folder of curated ready to go files.
#Example: python OG6_A_G.py -i (input folder of r2gs), -r (rules csv file), -s (folder of per seq stats) ''' #Example: python OG6_A_G.py -i (input folder of r2gs), -r (rules csv file), -s (folder of per seq stats)
# '''
import os import os