diff --git a/PTL2/Scripts/contamination.py b/PTL2/Scripts/contamination.py
index 1541a39..5817b6f 100644
--- a/PTL2/Scripts/contamination.py
+++ b/PTL2/Scripts/contamination.py
@@ -478,7 +478,7 @@ def run(params):
 			os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')
 		elif params.cl_tree_method == 'raxml':
 			os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
-		trees.run(params)
+		
 
 			#if 'iqtree' in params.cl_tree_method:
 				#os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')