From 99647c87bc7cf304c8149dc7154d8e0b634a80b4 Mon Sep 17 00:00:00 2001 From: "Godwin N. Ani" Date: Wed, 9 Jul 2025 13:59:28 -0400 Subject: [PATCH] Update contamination.py --- PTL2/Scripts/contamination.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/PTL2/Scripts/contamination.py b/PTL2/Scripts/contamination.py index 1541a39..5817b6f 100644 --- a/PTL2/Scripts/contamination.py +++ b/PTL2/Scripts/contamination.py @@ -478,7 +478,7 @@ def run(params): os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*') elif params.cl_tree_method == 'raxml': os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*') - trees.run(params) + #if 'iqtree' in params.cl_tree_method: #os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')