From a515a08c6187c6fbf384da794fbc9a0189d89c53 Mon Sep 17 00:00:00 2001
From: Auden Cote-L'Heureux <52716489+AudenCote@users.noreply.github.com>
Date: Fri, 6 Oct 2023 10:41:29 -0400
Subject: [PATCH] Fixing same contig/OG number bug in 6_FilterPartials.py

---
 PTL1/Transcriptomes/Scripts/6_FilterPartials.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/PTL1/Transcriptomes/Scripts/6_FilterPartials.py b/PTL1/Transcriptomes/Scripts/6_FilterPartials.py
index d243472..f1248de 100644
--- a/PTL1/Transcriptomes/Scripts/6_FilterPartials.py
+++ b/PTL1/Transcriptomes/Scripts/6_FilterPartials.py
@@ -301,7 +301,7 @@ def filter_NTD_data(args, OGLenDB):
 	good_NTD_seqs = []; good_AA_seqs = []
 	for rec in starting_NTD_seqs:
 		og_number = re.split('OG.{1}_', rec)[-1][:6]
-		og_prefix = rec.split(og_number)[0][-4:]
+		og_prefix = rec.split(og_number)[-2][-4:]
 		og = og_prefix + og_number
 
 		if len(starting_AA_seqs[rec]) <= 1.5*OGLenDB[og] and len(starting_AA_seqs[rec]) >= 0.33*OGLenDB[og] and '-'.join(rec.split('_')[1:]) not in short_from_translation: