diff --git a/PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py b/PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py index b385732..4e7800e 100644 --- a/PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py +++ b/PTL1/Transcriptomes/Scripts/5_GCodeTranslate.py @@ -4,7 +4,7 @@ # This script is intended to translate nucleotide sequences. It does this using # the gcode_output.tsv file output by script 4 and containing in-frame stop codon # frequencies. The user can use this stop codon information to fill in the last -# column in this file with the genetic code for each taxon. If the user input a +# column in this file with the genetic code for each taxon, as outlined in the Wiki on Github. If the user input a # genetic code or list of genetic codes to script 1, then the gcode_output.tsv will # be filled automatically. sequences are translated using the Diamond BLASTp results # from OG assignment as a starting point for determining coding sequence boundaries. @@ -14,7 +14,7 @@ # of transcriptomic data, poor genetic code assignment or low-quality/partial data can # interfere with this process). -# This script is intended to be run using the wrapper.py as part of the PhyloToL 6 Part 1 +# This script is intended to be run using the wrapper.py as part of the EukPhylo Part 1 # pipeline. It requires that the setup of the 'Output' folder be that as output by script 4 # of this pipeline.