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Update run_eukphylo.sh

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Adri K. Grow 2025-09-19 12:19:10 -04:00 committed by GitHub
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PTL2/run_eukphylo.sh
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@ -37,15 +37,15 @@ conda activate /work/pi_lkatz_smith_edu/Conda_PTL6p2/envs/PTL/
module purge # Cleans up any loaded modules module purge # Cleans up any loaded modules
module use /gridapps/modules/all # make sure module locations is loaded module use /gridapps/modules/all # make sure module locations is loaded
module load slurm module load slurm
module load ETE-3.1.3-foss-2024a module load ETE/3.1.3-foss-2024a
module load Biopython/1.79-gfbf-2023a module load Biopython/1.79-gfbf-2023a
module load DIAMOND/2.1.8-GCC-12.3.0 module load DIAMOND/2.1.8-GCC-12.3.0
module load MAFFT-7.526-GCC-13.3.0 module load MAFFT/7.526-GCC-13.3.0-with-extensions
module load RAxML-NG-1.2.2-GCC-13.2.0 module load RAxML-NG/1.2.2-GCC-13.2.0
module load IQ-TREE-2.3.6-gompi-2023a module load IQ-TREE/2.3.6-gompi-2023a
module load tqdm/4.66.1-GCCcore-12.3.0 module load tqdm/4.66.1-GCCcore-12.3.0
module load Python/3.9.6-GCCcore-11.2.0 module load Python/3.12.3-GCCcore-13.3.0
module load Guidance_mid #Smith College HPC specific module load Guidance_mid/2.1b-foss-2023a #Smith College HPC specific
export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific #export PATH=$PATH:/Path/To/Executable/Files export PATH=$PATH:/beegfs/fast/katzlab/grid_phylotol_setup/programs/standard-RAxML-master #Smith College HPC specific #export PATH=$PATH:/Path/To/Executable/Files