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Updating header in 2a_Identify_rRNA.py

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Auden Cote-L'Heureux 2025-01-19 10:59:10 -05:00 committed by GitHub
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PTL1/Transcriptomes/Scripts/2a_Identify_rRNA.py
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@ -5,12 +5,12 @@
# all length-filtered assembled transcripts against a reference database. It then
# writes these sequences into a separate file, removing them from the remainder
# of the sequences that will go forwards for gene family assignment. This script
# should be in Part 1 of the PhyloToL version 6 pipeline using the script wrapper.py.
# should be in Part 1 of the EukPhylo pipeline using the script wrapper.py.
# You must run Script 1a before this step. Optionally, you may also have run Script 1b.
# Before running this script, ensure that you have a properly formatted rRNA reference
# BLAST database in the Databases/db_BvsE/SSULSUdb folder; it is relatively narrow in scope
# and could be easily replaced
# and could be easily replaced or updated to better capture a user's target taxa
#Dependencies
import argparse, os, sys