YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 11:30:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Updating header in 2a_Identify_rRNA.py

Browse Source
This commit is contained in:
Auden Cote-L'Heureux 2025-01-19 10:59:10 -05:00 committed by GitHub
parent ea96ad0fe4
commit b61eb8be1b
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
PTL1/Transcriptomes/Scripts/2a_Identify_rRNA.py
View File

@ -5,12 +5,12 @@
# all length-filtered assembled transcripts against a reference database. It then # all length-filtered assembled transcripts against a reference database. It then
# writes these sequences into a separate file, removing them from the remainder # writes these sequences into a separate file, removing them from the remainder
# of the sequences that will go forwards for gene family assignment. This script # of the sequences that will go forwards for gene family assignment. This script
# should be in Part 1 of the PhyloToL version 6 pipeline using the script wrapper.py. # should be in Part 1 of the EukPhylo pipeline using the script wrapper.py.
# You must run Script 1a before this step. Optionally, you may also have run Script 1b. # You must run Script 1a before this step. Optionally, you may also have run Script 1b.
# Before running this script, ensure that you have a properly formatted rRNA reference # Before running this script, ensure that you have a properly formatted rRNA reference
# BLAST database in the Databases/db_BvsE/SSULSUdb folder; it is relatively narrow in scope # BLAST database in the Databases/db_BvsE/SSULSUdb folder; it is relatively narrow in scope
# and could be easily replaced # and could be easily replaced or updated to better capture a user's target taxa
#Dependencies #Dependencies
import argparse, os, sys import argparse, os, sys