diff --git a/Utilities/for_trees/CountTaxonOccurence.py b/Utilities/for_trees/CountTaxonOccurence.py index fe41ddd..e4de92f 100644 --- a/Utilities/for_trees/CountTaxonOccurence.py +++ b/Utilities/for_trees/CountTaxonOccurence.py @@ -7,8 +7,8 @@ Inputs: Directory of postguidance files Optional: use the --minor flag and include a file named focal_minors.txt in same folder (do not put file name in command line). This file should be csv of targets (Am_tu, Sr_rh, Sr_ci) Optional: OR use the --major flag and include a file named focal_majors.txt in same folder (do not put file name in command line). This file should be csv of targets (Am, Sr) Outputs: CSV file tallying all the counts of taxa in each OG file plus minor and major clade tallies -Command line: python3 CountTaxonOccurence_faster_minor.py --input