From b667dd647803f6e7c5449edf17cb3fd2878a18d9 Mon Sep 17 00:00:00 2001 From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com> Date: Wed, 7 Aug 2024 18:16:01 -0400 Subject: [PATCH] Update CountTaxonOccurence.py updated header --- Utilities/for_trees/CountTaxonOccurence.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/Utilities/for_trees/CountTaxonOccurence.py b/Utilities/for_trees/CountTaxonOccurence.py index fe41ddd..e4de92f 100644 --- a/Utilities/for_trees/CountTaxonOccurence.py +++ b/Utilities/for_trees/CountTaxonOccurence.py @@ -7,8 +7,8 @@ Inputs: Directory of postguidance files Optional: use the --minor flag and include a file named focal_minors.txt in same folder (do not put file name in command line). This file should be csv of targets (Am_tu, Sr_rh, Sr_ci) Optional: OR use the --major flag and include a file named focal_majors.txt in same folder (do not put file name in command line). This file should be csv of targets (Am, Sr) Outputs: CSV file tallying all the counts of taxa in each OG file plus minor and major clade tallies -Command line: python3 CountTaxonOccurence_faster_minor.py --input --minor OR -Command line: python3 CountTaxonOccurence_faster_minor.py --input --major +Command line: python3 CountTaxonOccurence.py --input --minor OR +Command line: python3 CountTaxonOccurence.py --input --major '''