YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 06:40:25 +08:00
Code Issues Packages Projects Releases Wiki Activity

Cleaning up length filter

Browse Source
This commit is contained in:
Auden Cote-L'Heureux 2023-11-27 14:11:07 -05:00 committed by GitHub
parent 0faa9f0b14
commit bacb094028
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
PTL1/Transcriptomes/Scripts/6_FilterPartials.py
View File

@ -304,7 +304,7 @@ def filter_NTD_data(args, OGLenDB):
og_prefix = rec.split(og_number)[-2][-4:]
og = og_prefix + og_number
if len(starting_AA_seqs[rec]) <= 1.5*OGLenDB[og] and len(starting_AA_seqs[rec]) >= 0.33*OGLenDB[og] and '-'.join(rec.split('_')[1:]) not in short_from_translation:
if len(starting_AA_seqs[rec]) <= 1.5*OGLenDB[og] and 3*len(starting_AA_seqs[rec]) >= OGLenDB[og] and '-'.join(rec.split('_')[1:]) not in short_from_translation:
good_NTD_seqs.append((rec, starting_NTD_seqs[rec]))
good_AA_seqs.append((rec, starting_AA_seqs[rec]))