From bdec8612eea910a02d42cc3a1f11dc1d3958027b Mon Sep 17 00:00:00 2001
From: "Adri K. Grow" <42044618+adriannagrow@users.noreply.github.com>
Date: Fri, 19 Sep 2025 11:46:14 -0400
Subject: [PATCH] Update run_eukphylo.sh

---
 PTL2/run_eukphylo.sh | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/PTL2/run_eukphylo.sh b/PTL2/run_eukphylo.sh
index 1ef1864..09b52c3 100644
--- a/PTL2/run_eukphylo.sh
+++ b/PTL2/run_eukphylo.sh
@@ -37,12 +37,12 @@ conda activate /work/pi_lkatz_smith_edu/Conda_PTL6p2/envs/PTL/
 module purge       #Cleans up any loaded modules
 module use /gridapps/modules/all    #make sure module locations is loaded
 module load slurm
-module load ETE
+module load ETE-3.1.3-foss-2024a
 module load Biopython/1.79-gfbf-2023a
 module load DIAMOND/2.1.8-GCC-12.3.0
-module load MAFFT
-module load RAxML
-module load IQ-TREE/2.1.2-gompi-2021b
+module load MAFFT-7.526-GCC-13.3.0
+module load RAxML-NG-1.2.2-GCC-13.2.0
+module load IQ-TREE-2.3.6-gompi-2023a
 module load tqdm/4.66.1-GCCcore-12.3.0
 module load Python/3.9.6-GCCcore-11.2.0
 module load Guidance_mid #Smith College HPC specific