diff --git a/README.md b/README.md
index e27a33c..d634822 100644
--- a/README.md
+++ b/README.md
@@ -3,8 +3,8 @@ An updated version of PhyloToL started in 2023
 
 [PTL1](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL1) includes scripts for assigning transcripts and cds' to gene familes (OGs)
 
-[PTL2](../PhyloToL-6/PTL2) is repository for main MSA and tree building scripts
+[PTL2](https://github.com/Katzlab/PhyloToL-6/tree/main/PTL2) is a repository for main MSA and tree building scripts
 
-HookDB is our set of eukaryotic gene families, a subsample of gene families from orthomcl 6
+[HookDB](https://github.com/Katzlab/PhyloToL-6/tree/main/HookDB) is our set of eukaryotic gene families, a subsample of gene families from orthomcl 6
 
-Utilities folder includes many useful tools for people analyzing sequence data
+[Utilities](https://github.com/Katzlab/PhyloToL-6/tree/main/Utilities) includes many useful tools for analyzing sequence data.