diff --git a/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py b/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py index bb1ed61..51136f7 100644 --- a/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py +++ b/PTL1/Transcriptomes/Scripts/1b_CrossPlateContamination.py @@ -1,11 +1,16 @@ # Last updated 2/23/2022 +# Authors: Jean-David Grattepanche and Auden Cote-L'Heureux # This script is intended to remove intra-plate contamination # by removing sequences with low coverage relative to other # very similar sequences from samples sequenced on the same -# plate. +# plate. This script is optional, but to be run as part of the +# PhyloToL version 6 Part 1 pipeline using the script wrapper.py -# Before running this script, you must run Script 1a. +# Before running this script, you must run Script 1a. The default +# clustering parameters are below, decided upon after manual inspection +# of results from sample data under multiple parametrizations, but are +# free to be changed by the user. #Dependencies import sys