YuuMJ1997/EukPhylo
1
0
Fork 0
mirror of http://43.156.76.180:8026/YuuMJ/EukPhylo.git synced 2025-12-27 03:40:24 +08:00
Code Issues Packages Projects Releases Wiki Activity

Update and rename CladeGrabbing_v3.2.py to CladeGrabbing.py

Browse Source
This commit is contained in:
Godwin Ani 2024-06-03 16:03:51 -04:00 committed by GitHub
parent 160c4e58cc
commit c41de01a2c
No known key found for this signature in database
GPG Key ID: B5690EEEBB952194
1 changed files with 1 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

2
Utilities/for_trees/CladeGrabbing_v3.2.py → Utilities/for_trees/CladeGrabbing.py
View File

@ -4,7 +4,7 @@
#Dependencies: Python3, ete3, Biopython
#Inputs: A folder containing: all PTLp2 output trees and all corresponding unaligned .fasta (pre-guidance) files
#Outputs: A folder of grabbed clades and filtered unaligned fasta files
#Example: python CladeGrabbing_v3.2.py --input /Path/to/trees --target Sr_rh --min_presence 20
#Example: python CladeGrabbing.py --input /Path/to/trees --target Sr_rh --min_presence 20
#IMPORTANT: key parameters explained in "add_argument" section below
#Dependencies