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Update contamination.py

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Godwin N. Ani 2025-04-07 12:36:17 -04:00 committed by GitHub
parent 7074a1e71a
commit c92f490837
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PTL2/Scripts/contamination.py
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@ -472,8 +472,10 @@ def run(params):
cl_fasttree(params) cl_fasttree(params)
elif params.cl_tree_method == 'iqtree': elif params.cl_tree_method == 'iqtree':
cl_iqtree(params) cl_iqtree(params)
os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')
elif params.cl_tree_method == 'iqtree_fast': elif params.cl_tree_method == 'iqtree_fast':
cl_iqtree_fast(params) cl_iqtree_fast(params)
os.system('rm -r ' + params.output + '/Output/Intermediate/IQTree/*')
elif params.cl_tree_method == 'raxml': elif params.cl_tree_method == 'raxml':
os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*') os.system('rm -r ' + params.output + '/Output/Intermediate/RAxML/*')
trees.run(params) trees.run(params)